Publications

Selected publications and research articles.

Jungang Wang
These authors contributed equally
, Xiaofeng Li
These authors contributed equally
, Yibin Wang
These authors contributed equally
, Jishan Lin
These authors contributed equally
, Shuai Chen
These authors contributed equally
, Hongbo Liu
These authors contributed equally
, Xiao Chen
These authors contributed equally
, Kun Chai, Aoqian Dong, Tingting Zhao, Cuilian Feng, Ruijie Wu, Ping Zhao, Yaodong Zheng, Zhongqiang Xia, Shengcheng Zhang, Yi Liu, Shenyang Qu, Ziqi Ye, Yuhan Song, Qingyuan Deng, Xiaofei Zeng, Guangrun Yu, Ran Kong, Baoqing Zhang, Wei Zhang, Peifang Zhao, Jun Mao, Xin Lu, Haifeng Jia, Xueting Zhao, Qianqian Zhang, Shuzhen Zhang, Wenwei Cai, Dongao Huo, Ling Li, Yuqing Gong, Shiqiang Huang, Yongji Huang, Zehuai Yu, Zuhu Deng, Baoshan Chen, Yuebin Zhang, Muqing Zhang, Ray Ming, Xingtan Zhang (2026). Genetic Architecture of Sugarcane Traits in a Polyploid Genomics Framework. Nature.
URL DOI
Bilig Sod, Xueqian Jiang, Fei He, Xiaofei Zeng, Yibin Wang, Yaodong Zheng, Mingna Li, Xue Wang, Tiejun Zhang, Lin Chen, Ming Xu, Yanchao Xu, Kai Zhu, He Zhu, Haojie Yu, Junmei Kang, Qingchuan Yang, Xingtan Zhang, Ruicai Long (2026). The Haplotype-Resolved and near-Telomere-to-Telomere Genome Assembly for the Autotetraploid Alfalfa. Plant Communications.
URL DOI
Fang Wang, Yibin Wang, Xiaofei Zeng, Shengcheng Zhang, Jiaxin Yu, Dongxi Li, Xingtan Zhang (2024). MIKE: An Ultrafast, Assembly-, and Alignment-Free Approach for Phylogenetic Tree Construction. Bioinformatics.
DOI
Haibao Tang, Vivek Krishnakumar, Xiaofei Zeng, Zhougeng Xu, Adam Taranto, Johnathan S. Lomas, Yixing Zhang, Yumin Huang, Yibin Wang, Won Cheol Yim, Jisen Zhang, Xingtan Zhang (2024). JCVI: A Versatile Toolkit for Comparative Genomics Analysis. iMeta.
DOI
Xiaofei Zeng, Zili Yi, Xingtan Zhang, Yuhui Du, Yu Li, Zhiqing Zhou, Sijie Chen, Huijie Zhao, Sai Yang, Yibin Wang, Guoan Chen (2024). Chromosome-Level Scaffolding of Haplotype-Resolved Assemblies Using Hi-C Data without Reference Genomes. Nature Plants.
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Yixue Bao, Qing Zhang, Jiangfeng Huang, Shengcheng Zhang, Wei Yao, Zehuai Yu, Zuhu Deng, Jiaxin Yu, Weilong Kong, Xikai Yu, Shan Lu, Yibin Wang, Ru Li, Yuhan Song, Chengwu Zou, Yuzhi Xu, Zongling Liu, Fan Yu, Jiaming Song, Youzong Huang, Jisen Zhang, Haifeng Wang, Baoshan Chen, Xingtan Zhang, Muqing Zhang (2024). A Chromosomal-Scale Genome Assembly of Modern Cultivated Hybrid Sugarcane Provides Insights into Origination and Evolution. Nature Communications.
URL DOI
Weilong Kong, Yibin Wang, Shengcheng Zhang, Jiaxin Yu, Xingtan Zhang (2023). Recent Advances in Assembly of Plant Complex Genomes. Genomics, Proteomics & Bioinformatics.
DOI
Yibin Wang
These authors contributed equally
, Jiaxin Yu
These authors contributed equally
, Mengwei Jiang, Wenlong Lei, Xingtan Zhang, Haibao Tang (2023). Sequencing and Assembly of Polyploid Genomes. Polyploidy: Methods and Protocols.
URL DOI
Shuai Chen, Pengjie Wang, Weilong Kong, Kun Chai, Shengcheng Zhang, Jiaxin Yu, Yibin Wang, Mengwei Jiang, Wenlong Lei, Xiao Chen, Wenling Wang, Yingying Gao, Shenyang Qu, Fang Wang, Yinghao Wang, Qing Zhang, Mengya Gu, Kaixing Fang, Chunlei Ma, Weijiang Sun, Naixing Ye, Hualing Wu, Xingtan Zhang (2023). Gene Mining and Genomics-Assisted Breeding Empowered by the Pangenome of Tea Plant Camellia Sinensis. Nature Plants.
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Qing Zhang, Yiying Qi, Haoran Pan, Haibao Tang, Gang Wang, Xiuting Hua, Yongjun Wang, Lianyu Lin, Zhen Li, Yihan Li, Fan Yu, Zehuai Yu, Yongji Huang, Tianyou Wang, Panpan Ma, Meijie Dou, Zongyi Sun, Yibin Wang, Hengbo Wang, Xingtan Zhang, Wei Yao, Yuntong Wang, Xinlong Liu, Maojun Wang, Jianping Wang, Zuhu Deng, Jingsheng Xu, Qinghui Yang, ZhongJian Liu, Baoshan Chen, Muqing Zhang, Ray Ming, Jisen Zhang (2022). Genomic Insights into the Recent Chromosome Reduction of Autopolyploid Sugarcane Saccharum Spontaneum. Nature Genetics.
URL DOI