CHANGES

[v0.3.2] - 2026-07-14¶

Added¶

Added example data and an automated test workflow for installation verification.

Note: No update is required if you are already using v0.3.1 on linux-64 plantform.

Bug fixes¶

Fixed the bug that _chromap cannot be used on the linux-aarch64 platform, which was reported in v0.3.1

[v0.3.1] - 2026-07-04¶

Enhancement¶

hic mapper:
- Added support for the minibwa aligner (by --aligner minibwa for hic mapper or --hic-aligner minibwa for pipeline). - Automatically set higher k=27 and w=14 values for large genomes (> 8 Gb) when using the Chromap aligner.
mapper:
- Added support for BAM input format for raw Pore-C and CiFi data.
hyperpartition: Optimized contig splitting to significantly improve execution speed.
collapse rescue: Accelerated kprune performance by processing homologous groups separately.
collapse from-gfa/from-depth: Added the --main-peak option to allows users to manually specify a custom coverage main peak.

cphasing-rs porec-dup, Speed up.
cphasing-rs pairs-dup, Speed up.

Bug fixes¶

hic mapper: Fixed a bug that prevented processing multiple input files
hcr, try to fixed bug reported in #53

[v0.3.0] - 2026-05-07¶

New features¶

prepartition: Introduced a method to use a monoploid reference for guiding the initial contig clustering. This can be integrated into the pipeline using the -fc flag to bypass the 1st-round hyperpartition.
pipeline: Added the --gfa option to facilitate the removal of redundant contigs post-scaffolding.

Enhancement¶

Improved anchor rate for Pore-C data
- mapper
- Minimized the incidence of h-trans artifacts in Pore-C alignments specifically for reads with a MAPQ of 1.
- pipeline
- Adjusted -q2 to 1 to leverage more hyperedges for phasing haplotypes.

Enhanced performance of collapsed rescue
- pipeline
- Refactored the step ordering to seamlessly integrate the collapsed rescue module.
- The collapsed rescue module can now be activated by providing a collapsed contig list (--collapsed-contigs) or by using the --collapsed-rescue flag (which delivers higher performance implicitly suited for Pore-C data). - collapsed rescue
- Refactored the underlying code to boost overall execution speed.

rename
- support for rename chromosome-level fasta (cphasing rename -r mono.fa -f groups.asm.fasta)

Bug fixes¶

alleles
- Contig length support has been significantly scaled up, increasing the maximum supported length from 134 Mb to 34 Gb (handling up to 1M contigs).
hyperpartition
- Fixed a performance bug that caused kprune to execute slowly. - Resolved a bug reported in issue #45.
pipeline
- Fixed an issue where the second round inadvertently re-ran even if pairs.pqs already existed.
scaffolding
- Fixed a bug preventing the scaffolding module from properly processing duplicated contigs.
curation
- Fixed an issue where separating haplotypes resulted in only one chromosome appearing in the final assembly.
hic mapper
- Fixed an error in Minimap2 reporting self.prefix as unassigned. - Resolved a bug that caused the repeated conversion of pairs files to pairs.pqs.
cphasing-rs bam2paf
- Fixed a bug that generated incorrect read positions during alignment parsing.

Acknowledgments¶

We are grateful to the Director of Bioinformatics (Zhang Yaolong) from HuaBiology for the optimization suggestions provided.

[v0.2.10] - 2026-01-25¶

Enhancements¶

hic mapper, supported _chromap for linux-aarch64 platform

Bug fixes¶

alleles
- fixed bug that alleles load two times fasta
mapper - fixed bug that conflicts with the loading of .fai when submitting multiple jobs. - fixed bug that can not load multiple fastq files
plot
- fixed bug that can not plot duplicated contigs (without rename) - fixed bug that of "TypeError: unsupported operand type(s) for *: 'NoneType' and 'float'" error when plot each chromosome

sort-chromosomes, normalized by length
hyperpartition - fixed bug that reported in issue #44, which can not generate .hg file (to specified --output-hg)

[v0.2.9] - 2026-01-10¶

Enhancement¶

hyperpartition - reduced the time consumption of the large hypergraph processing

curation: 6.curation for pipeline
- add a step to generate the commands related for curation

Bug fixes¶

pairs-break
- fixed bug that reported in issue #39, which observed the loss signals of broken contigs
hyperpartition
- fixed bug that run alleles when --merge-use-allele specified
pipeline
- fixed bug that when -ss 5, the program cannot report logs.
plot
- fixed bug of total chromsizes error showed in the picture, when a chromosome length larger than 2^32/2
mapper - Fixed bug that conflicts with the loading of .fai when submitting multiple jobs.

[v0.2.8] - 2025-12-15¶

New features¶

hic mapper, add BwaMapper, which enables user choose the aligner to bwa-mem2 through --hic-alinger bwa-mem2.

Enhancement¶

alleles - speed up the calculation of similarity by parallelize
hypergraph - speed up the hypergraph construction from .porec.gz or pairs.

hyperpartition, - speed up the procedure of graph construction

plot - reduced time consumption at least 60% and reduced the memory usage

Bug fixes¶

hyperpartition, fixed bug that when q1=0 q2=1, the program can not filter q2=1 in the second round cluster.
plot, fixed bug that "Found bin ID < 0"

[v0.2.7] - 2025-11-20¶

New features¶

Supported for linux-aarch64 platform, please download from github release.

Enhancement¶

mapper
- Changed default --mm2-params from "-x map-ont" to "-x lr:hq", which was recommended by ONT developer for chemistry v14.

hic mapper
- Updated chromap from v0.2.5 to v0.3.2, which will reduce the runtime on the used CPU larger than 12.
- Enabled input multiple Hi-C data

methalign
- optimized the pipeline of 5mC sites calling on reference
- speed up the algorithm using rust and slightly increase the accuracy of the refined alignments.
pipeline
- add --split-length to automatically split contig to partition, which avoid the extremely long contig errors clustered together
- add --merge-use-allele, use the allelic information to help the homologous chromosome clustering

hyperpartition
- Partially resolved problem that extremely long contig errors aggregated together by splitting contigs
- Enable the first round partition to merge groups that contain slightly h-trans signals (--merge-use-allele)
- Improved the accuracy of results when merging N groups to k groups.

scaffolding
- Significantly reduce the number of large-scale false orientation errors.
- Sort haplotypes by pairwise similarity.

plot
- add --avoid-overlap-yticks parameter to avoid the overlapping of yticks
- enable using --add-hap-border to add border of each chromosome
- add --no-x-ticks and --no-y-ticks
- To reduce the size of the heatmap output file, we reduced the size of the picture by half
- change default colormap from red1p_r to red1p_r_half.
- add automatically vmax for --scale log1p or --scale log
- only balance cis contacts and add custom iced balance function to accelerate it

Bug fixes¶

methalign, fixed bug that input bam contain 5hmC
hypergraph, fixed bug that report at issue #40
cphasing-rs pairs-intersect, fix bug that "an 'Err' value: ShapeMismatch(ErrString("filter's length: 999999 differs from that of the series: 1000000"))"
cphasing-rs splitclm, fixed bug that it will lose several pairs.

Acknowledgment¶

We are grateful to the Director of Bioinformatics (Zhang Yaolong) from HuaBiology for the optimization suggestions provided.

[v0.2.6] - 2025-03-27¶

New features¶

collapse, rescue the collapsed contigs

Enhancement¶

Parameter optimization.
Supported pairs.pqs processing.
chimeric, improve the performance that avoids too high of false correct
pipeline, if input pairs or pairs.gz, it will first convert it to pairs.pqs to speed up subsequence pairs data load. About a 15 percent increase in speed.
plot, enable plot the border or haplotypes (--add-hap-border)

Bug fixes¶

pipeline, fixed bug that when user input uncommon suffix of Hi-C data (e.g. "_R1.f.fastq.gz") the pairs file could not be found. #issue17
hypergraph
- fixed bug that cphasing-rs pairs-intersect can not filter contacts by mapq
- fixed bug that report error when edge_length set to 0
pairs2cool, fixed bug that loss contacts when the chromsizes in pairs.gz is unsorted.
rename - fixed bug that when the chromname in agp is named group??, the rename cannot be executed - generate the unrenamed chromosome, #issue16

[v0.2.5] - 2025-02-07¶

New features¶

PQS, custom format of contacts to speed up the load and parse, do not used in this version.

Enhancement¶

cphasing-rs, slightly speed up pairs2clm
rename, use g1, g2, g3 ... to rename duplicates chromosomes, when --unphased specified.
hcr_by_contacts, speed up it

Bug fixes¶

hypergraph, fixed bug that report error of polars prompt of set "skip_nulls=False"

[v0.2.4] - 2025-01-25¶

Enhancement¶

pairs2depth, speed up by pipeline
alleles, add --trim-length to trim the both end of contigs to remove the effect of overlapping from hifiasm assembly graph.
pipeline - --preset precision: Optimize parameters to improve accuracy at the expense of anchor rate - --preset sensitive: Using in some complex genome, which contain many fragmented contigs and low signals contigs

Bug fixes¶

activate_cphasing, fixed bug that exit shell window when pixi failed to install
pipeline - fixed bug that program can not exit when error occurred - fixed bug that alleles parameters cannot affect in phasing mode - fixed bug that reported in issue #14, which --chimeric-correct mode cannot use correct fasta in 3.hyperpartition
plot, fixed bug that program can not coarsen adjusted matrix to plot another binsize matrix

[v0.2.3] - 2025-01-14¶

Enhancement¶

pipeline, report peak memory usage
hyperpartition - add --min-cis-weight=5.0 to remove low contacts contigs - increase --min-contacts to 25.0 to remove low contacts contigs

Bug fixes¶

pairs2cool, fixed bug that "bin1_id > bin2_id" in some cases

[v0.2.2] - 2025-01-10¶

Enhancement¶

pipeline, When mode=phasing, pipeline integrating 1.alleles into 3.hyperpartition to speed up

Bug fixes¶

prepare, fixed bug of "got unexpected keyword argument has_header'

[v0.2.1] - 2025-01-07¶

Enhancement¶

hypergraph, add hcr_bed filter step.
hyperpartition, speed up the phasing mode
activate_cphasing, use pixi to activate the environment of CPhasing
pairs2cool, speed up it at the expense of memory consumption
plot, speed up it

Bug fixes¶

alleles, a cheat method to fix bug of partig can not parse contig > 130 Mb
rename, bug of read agp
pipeline - input hic with _1 or _2 suffix can not load successful - input hic can not find fastq path in output dir

[v0.2.0] - 2024-10-1¶

Enhancement¶

pipeline - change the normalization method of the hic pipeline - change pipeline output directories
hyperpartition, improve the performance of cluster merge

Bug fixes¶

plot, fixed bug of split contigs

[v0.1.9] - 2024-07-09¶

New features¶

collapsed-rescue, init a collapsed contigs rescue function

Enhancement¶

higig - support for hifi data. Moreover, support for junk and collapsed identification - correct-alignments, increase performance by filtering low quality LIS
pairs2cool, add min_mapq filtering
plot, add triangle plot
scaffolding, speed up split clm by cphasing-rs splitclm
alleles, speed up

Bug fixes¶

pipeline - fixed bug of contacts generating - fixed bug of the corrected.agp not output when chimeric correct mode
scaffolding, fixed bug of countre extract not found contigs
hcr_from_contacts, find error peak in low coverage regions

[v0.1.8] - 2024-05-15¶

Enhancement¶

hypergraph, Extractor, add mapq to hypergraph
remove_misassembly, add remove_misassembly of error between homologous chromosome

Bug fixes¶

plot, fixed bug of resolution not in filename

[v0.1.7] - 2024-05-11¶

Enhancement¶

hypergraph, speed up data loading
scaffolding, speed up clm loadding

[v0.1.6] - 2024-05-07¶

Enhancement¶

hcr_by_contacts, remove whole collapsed contigs
stat_porec_table, reduce memory usage

Bug fixes¶

scaffolding, length db not load contig that RE count < 3
simulate_collapse, fixed bug of contig position in collapsed contigs

[v0.1.5] - 2024-04-29¶

Enhancement¶

environment, add pigz
hic mapper, add "remove pcr duplicates" as default parameters

[v0.1.4] - 2024-04-23¶

Enhancement¶

colorful the help text
hcr, use kde peaks
pipeline, use

[v0.1.3] - 2024-04-22¶

New features¶

_chromap, add a modified chromap

Enhancement¶

hypergraph, reduce memory usage

[v0.1.2] - 2024-04-18¶

Enhancement¶

scaffolding, optimized
cphasing-rs pairs2clm, speed up

[v0.1.1] - 2024-04-11¶

New features¶

hitig - scaffolding, which enable to scaffolding by ultra-long reads.

Enhancement¶

plot, speed up
alleles, remove filter function
hypergraph, speed up by porec table load.

[v0.1.0] - 2024-04-07¶

New features¶

alleles2, a method for allelic contig identification by self mapping
cphasing-rs prune, a method to prune by raw allele table (ALLHiC allele table)

Enhancement¶

scaffolding, increase the performance of long contigs

Bug fixes¶

plot, fixed bug that it can not be used in pandas v2.0

[v0.0.64] - 2024-03-11¶

Bug fixes¶

hyperpartition, fixed the inconsistent of phasing results, when specified alleletable and prunetable
alleles, filterring by valid kmer length of contigs

[v0.0.62] - 2024-02-18¶

New features¶

cphasing-rs kprune, increase the recall of cross-allelic

[v0.0.61] - 2024-01-19¶

New features¶

plot_high_order_distribution.py, plot the contact order distribution of pore-c alignments

Enhancement¶

scaffolding, adopt the HapHiC_sort to scaffolding, and add HaplotypeAlign
partig, change d to 0.1
AlleleTable, add strand column to the format of allele2
Tour, add to_dict, backup, save

[v0.0.60]¶

Enhancement¶

hyperpartition, add prune based on hypergraph
hyperpartition, add different n setting
pipeline, remove single kprune, change it to hypergraph prune

[v0.0.59]¶

Enhancement¶

hyperpartition, add automatic search resolution
kprune, update the formulate of normalization

[v0.0.58]¶

Enhancement¶

mapper, add restriction site filter and realign
hyperpartition, new mode by phasing
hyperpartition, support import pore-c table or pairs
HyperEdges, add contigsizes, mapq

[v0.0.57]¶

Enhancement¶

pipeline, add hcr
hcr, optimized

[v0.0.56]¶

Enhancement¶

cphasing-rs, update pairs-intersect and porec-intersect
kprune, remove count_re argument

[v0.0.55]¶

New features¶

hcr_from_contacts, add new function of hcr
plot_lines, plot lines of evaluation

[v0.0.54]¶

Bug fixes¶

pipeline, fixed bugs

[v0.0.53]¶

New features¶

pipeline, add a pipeline of C-Phasing

Enhancement¶

prepare, restruct
pairs2cool, move to second command

[v0.0.52]¶

Enhancement¶

kprune, load data into tempfile to decrease the memory usage.

[v0.0.51]¶

2023-11-11

New features¶

agp, add pseudo-agp, create a pseudo agp from simulation contigs

Bug fixed¶

hyperpartition, add cross_allelic_factor

[v0.0.50]¶

2023-11-10

Enhancement¶

kprune, add multiprocessing

[v0.0.49]¶

2023-11-10

Enhancement¶

cphasing-rs, update it into v0.0.10

New features¶

porec2csv, import porec table into pao csv
PoreCTable.binnify, binnify the contig by binsize
PoreCTable.divide_contig_by_nparts, divide contig by the number of parts

Bug fixed¶

hyperpartition, fixed bug that phasing mode report error when the prune table not apply

[v0.0.48]¶

2023-11-05

Enhancement¶

kprune, advanced it to identity more cross-allelic

New features¶

evaluate_prune.py, evaluate the result of kprune
methalign/pipe, init the pipeline of methalign

[v0.0.47]¶

2023-10-15

Enhancement¶

higig, mv ontig to hitig.

[v0.0.46]¶

Enhancement¶

hcr, add break_pos to correct hcr by break positions

Bug fixed¶

mapper, fixed min_quality can not be adopt

[v0.0.45]¶

Enhancement¶

hcr, intergated bed2depth into hcr

Bug fixed¶

bed2depth, fixed bug

[v0.0.44]¶

Enhancement¶

ontig, restruct the framework and add split-reads, find-chimeric, hcr three functions.

[v0.0.43] - 2023-09-24¶

New features¶

methalign, init

Enhancement¶

rename ultra_long to ontig

[v0.0.42] - 2023-09-22¶

Enhancement¶

ultra_long, expose ultra_long tutorial to C-Phasing README.md

[v0.0.41] - 2023-08-25¶

Bug fixed¶

scaffolding, fixed cp groups.agp error when change the name of agp

[v0.0.40]¶

2023-08-19

Enhancement¶

add pyproject.toml

Bug fixed¶

setup.py, fixed the setup_helper error.

[v0.0.39]¶

Enhancement¶

before this version cphasing-rs can not found

[v0.0.38]¶

2023-08-18

Bug fixed¶

build, fixed bug that can not specify the output of agp
scaffolding, fixed bug that can not specify the output of agp

[v0.0.37]¶

2023-08-16

Enhancement¶

README.md, add detail describtions
scaffolding, directly output groups.agp

Bug fixed¶

fixed bug that resulted some misassembly from v0.0.17

[v0.0.36]¶

2023-08-14

Bug fixed¶

hyperpartition
- fixed bug from v0.0.35 that default run ultra-complex mode - fixed bug that whitelist can not used in single partition
recluster - fixed bug of KeyError

[v0.0.35]¶

2023-08-12

Enhancement¶

pairs2cool, add --fofn parameter
hyperpartition, mask ultra-complex parameter

[v0.0.34]¶

2023-08-11

Enhancement¶

mapper, compress hic mapper result
hyperpartition, add contig filter when import first cluster result
2023-08-04

Bug fixed¶

hypergraph, fixed the column index error

[v0.0.32]¶

2023-08-04

Bug fixed¶

hypergraph, fixed it can not parse single porec table

[v0.0.31]¶

2023-08-02

New features¶

ultra_long, add v1 pipeline

[v0.0.30]¶

2023-08-02

Enhancement¶

hypergraph, speed up

Bug fixed¶

porec-intersection, fixed it can not output result

[v0.0.29]¶

2023-07-31

Bug fixed¶

hyperpartition, fixed key word of edges not yet change to hypergraph

[v0.0.28]¶

2023-07-29

New features¶

collapse, create a collapse rescued contact matrix

Enhancement¶

update environment.yml
update cphasing-rs, which reduce the size of binary and update to v0.0.4

Bug fixed¶

scaffolding, fixed path error

[v0.0.27]¶

2023-07-14

Enhancement¶

remove check_allhic_version

[v0.0.26]¶

2023-07-12

New features¶

statcluster, stat the clustertable
plot_hist, plot the distribution of somethings

Enhancement¶

hypergraph, add prune allelic hyperedges
statagp, change agpstat to statagp
change extract to hypergraph
change optimize to scaffolding
hyperpartition, out "Chr??g?" as chromosome name

Bug fixed¶

hyprpartition, not add -pt or at, the -inc not work

[v0.0.25]¶

2023-07-05

New features¶

evalutate_known_assembly.py, evalutate the simulated human genome
cis_trans_by_contigs.py, calculate the cis and trans contacts by pairs
logo, add logo

Enhancement¶

hyperpartition, automatic using the exists first clusters results

[v0.0.24]¶

2023-06-20

New features¶

ultra_long, init ultra_long method

Enhancement¶

mapper, add outprefix prameter

[v0.0.23]¶

2023-06-17

New features¶

pictures, add the heatmap of M1

Enhancement¶

hyperpartition, expose --min-allelic-overlap
kprune, add sort and normalize function

[v0.0.22]¶

2023-06-16

New features¶

tmpoptimze, a temp function for order and orientation
PoreCMapper, based on minimap2 and cphasing-rs

Enhancement¶

plot, add --no-ticks to remove ticks from picture

[v0.0.21]¶

2023-06-12

Enhancement¶

hyperpartition - change zero-allelic to allelic-factor - add merge_cluster - init ultra_complex

Bug fixed¶

plot, enable factor can set to 1

[v0.0.20]¶

2023-06-07

Enhancement¶

AlleleTable, load info
PartigRecord, output allele table with additional information

New features¶

AlleleInfo, object function of allele table information

Bug fixed¶

HyperPartition, fixed bug of prunt -> prunetable

[v0.0.19]¶

2023-06-06

Enhancement¶

KPruneHyperGraph, speed up
HyperPartition, add the get_prunetable_KPrune

[v0.0.18]¶

2023-06-06

Enhancement¶

hyperpartition - min_weight, add a parameter of the graph minimum weight
IRMM, add a function of the graph filter by minimum weight

New features¶

KPruneHyperGraph, add a function that implement pruning on hypergraph

[v0.0.17]¶

2023-06-01

Enhancement¶

environment.yml, update
hyperpartition - add --first-cluster to load exists first cluster results - expose --zero-allelic parameter - expose --allelic-similarity parameter
PoreCTable, change to cphasing-rs porec table

New features¶

docs, add docs
utils - extract_matrix, extract matrix by th contig list - prune_matrix, prune matrix by prune table

Bug fixes¶

merge-matrix, fixed the empty contact in result

[v0.0.16]¶

2023-05-05

Enhancement¶

hyperpartition, add mutual exclusion merge

Bug fixes¶

hyperpartition, fixed the bug that incorrect scaffold length in_incremental_partition

[v0.0.15]¶

2023-05-01

New features¶

PruneTable, Object for prune table.

Enhancement¶

kprune, output prune table
hyperpartition - add k parameter to output the specified number groups

[v0.0.14]¶

2023-03-22

New features¶

plot_heatmap, custom function to plot heatmap

Enhancement¶

HyperPartition - add post check to increase the accuracy of partition - add min-contacts parameters to remove low contact contig pairs - add negative allelic algorithm - change multi to incremental - add whitelist and blacklist parameters

Bug fixes¶

KPrune, dropna in pixels which will let igraph fall into loops

[v0.0.13]¶

2023-03-15

New features¶

KPruner, prune contig contacts according similarity allele table

Enhancement¶

extract_incidence_matrix, restruct to speed up
extract, hyperpartition, import contig sizes instead of fasta
HyperPartition, add filter function of minimum scaffolding length
build, add only-agp option

Bug fixes¶

HyperExtractor, fixed the problem of read index for multi dataframe concat

[v0.0.12]¶

2023-03-11

New features¶

HyperGraph, instead of hypernetx to speed up
prepare, a cli function for some preparation for C-Phasing
optimize.cpp, optimize algorithm v1

Enhancement¶

HyperEdges, restruct to {idx, row, col}
Extractor and HyperExtractor, change to export HyperEdges
process_pore_c_table, speed up
HyperPartition, use custom HyperGraph to speed up
merge_matrix, merge binning matrix into whole contigs
optimize, cli for optimize score cacluation

Bug fixes¶

alleles, fix the bug of empty allele table

[v0.0.11]¶

2023-03-08

Enhancement¶

Extractor and HyperExtractor, change to export dict to list
HyperPartition, add parallel in hypergraph generation

[v0.0.10]¶

2023-03-08

New features¶

Extractor, extract edges from pairs file
HyperExtractor, extract hyperedges from pore-c table
HyperEdges, msgspec Struct for hyperedges serialization

Enhancement¶

HyperPartition, divesting edges extract function to improve usability

[v0.0.9]¶

2023-01-06 refactor the frame of cphasing that seperating the hic and pore-c pipelines

New features¶

agp2assembly, convert agp to assembly file
pairs2mnd, convert pairs to mnd file
paf2table, convert paf to table
pore_c_cchrom2contig, convert chromosome-level to contig-level
pairs_chrom2contig, convert chromosome-level to contig-level
optimzie, init add optimize

Enhancement¶

PAFTable, speed up
PoreCTable, speed up and add chrom2contig
HyperPartition, speed up the pore-c reads process
paf2pairs, speed up

Bug fixes¶

plot, to humanized

[v0.0.8]¶

2022-11-17

New features¶

hypergraph, contain a hypergraph cluster algorithms
HyperPartition, partition contigs in diploid or allopolyploid
PartigAllele, enable using sequences similarity to generate allele table
PAFTable, filter alignment
PoreCTable, stat alignment information

Enhancement¶

agp2fasta, build, using dictory instead of faidx to speed up

Bug fixes¶

PairHeader, save header without "\n".
rescue, fix CountRE only default load >=3.
plot, fix bug of hicexplorer outputFilename error.

[v0.0.7]¶

2022-10-31

New features¶

plot, provide adjust matrix and plot matrix function.
AdapativePartition, partition by adapative pipeline for find best results
PoreCMapper, Pore-C reads mapping pipeline.
PAFTable, a function for processing paf file. (include to_pairs)

Enhancement¶

correct, increase recall and precision to 70%
pairs, add chrom2contig to convert a chrom-level pairs to contig-level

[v0.0.6]¶

2022-10-07

New features¶

Change packages name to CPhasing.
New function of - correct - alleles - rescue - partition
New API of Pairs in core.

Bug fixes¶

Using normalized signal in prune.