Citation¶

如果使用了C-Phasing 请引用:

C-Phasing

Yibin Wang, Ping Zhao, Xiaofei Zeng, Jiaxin Yu, Aoqian Dong, Yi Liu, Mengwei Jiang, Fang Wang, Xiao Chen, Shengcheng Zhang, Shuai Chen, Yuqing Gong, Yixing Zhang, Ruicai Long, Maojun Wang, Haibao Tang and Xingtan Zhang. Enhanced Pore-C with C-Phasing Enables Chromosomal-Scale, Haplotype-Resolved Assembly of Ultra-Complex Genomes, 05 November 2025, PREPRINT (Version 1) available at Research Square [https://doi.org/10.21203/rs.3.rs-7343323/v1]

Bibliography

```text title="bib"
@online{EnhancedPoreCCPhasing2025,
title = {Enhanced {{Pore-C}} with {{C-Phasing Enables Chromosomal-Scale}}, {{Haplotype-Resolved Assembly}} of {{Ultra-Complex Genomes}}},
author = {Wang, Yibin and Zhao, Ping and Yu, Jiaxin and Dong, Aoqian and Liu, Yi and Jiang, Mengwei and Wang, Fang and Chen, Xiao and Zhang, Shengcheng and Chen, Shuai and Gong, Yuqing and Zhang, Yixing and Long, Ruicai and Wang, Maojun and Tang, Haibao and Zhang, Xingtan}
date = {2025-11-06},
doi = {10.21203/rs.3.rs-7343323/v1},
url = {https://www.researchsquare.com},
urldate = {2025-11-06},
abstract = {Ultra-complex, repeat-rich polyploids and hybrid genomes with extensive identical-by-descent regions pose a formidable challenge for chromosome-scale, haplotype-resolved assembly, since short-read scaffolding approaches such as Hi-C struggle to disambiguate their highly similar sequences. Long-re...},
langid = {english},

}
```

And HapHiC:

Xiaofei Zeng, Zili Yi, Xingtan Zhang, Yuhui Du, Yu Li, Zhiqing Zhou, Sijie Chen, Huijie Zhao, Sai Yang, Yibin Wang, Guoan Chen. Chromosome-level scaffolding of haplotype-resolved assemblies using Hi-C data without reference genomes. Nature Plants, 10:1184-1200. doi: https://doi.org/10.1038/s41477-024-01755-3

Bibliography

```text title="bib"
@article{zengChromosomelevelScaffoldingHaplotyperesolved2024,
title = {Chromosome-Level Scaffolding of Haplotype-Resolved Assemblies Using {{Hi-C}} Data without Reference Genomes},
author = {Zeng, Xiaofei and Yi, Zili and Zhang, Xingtan and Du, Yuhui and Li, Yu and Zhou, Zhiqing and Chen, Sijie and Zhao, Huijie and Yang, Sai and Wang, Yibin and Chen, Guoan},
date = {2024-08-05},
journaltitle = {Nature Plants},
shortjournal = {Nat. Plants},
pages = {1--17},
publisher = {Nature Publishing Group},
issn = {2055-0278},
doi = {10.1038/s41477-024-01755-3},
url = {https://www.nature.com/articles/s41477-024-01755-3},
urldate = {2024-08-07},
}
```

And ALLHiC

Xingtan Zhang, Shengcheng Zhang, Qian Zhao, Ray Ming, Haibao Tang. (2019) Assembly of allele-aware, chromosomal-scale autopolyploid genomes based on Hi-C data. Nature Plants, 5:833-845. doi: https://doi.org/10.1038/s41477-019-0487-8

Bibliography

```text title="bib"
@article{zhangAssemblyAlleleawareChromosomalscale2019,
title = {Assembly of Allele-Aware, Chromosomal-Scale Autopolyploid Genomes Based on {{Hi-C}} Data},
author = {Zhang, Xingtan and Zhang, Shengcheng and Zhao, Qian and Ming, Ray and Tang, Haibao},
date = {2019-08},
journaltitle = {Nature Plants},
shortjournal = {Nat. Plants},
volume = {5},
number = {8},
pages = {833--845},
publisher = {Nature Publishing Group},
issn = {2055-0278},
doi = {10.1038/s41477-019-0487-8},
url = {https://www.nature.com/articles/s41477-019-0487-8},
urldate = {2021-07-22},
issue = {8},
langid = {english},
}
```